This workshop is intended for researchers at all levels but especially those relatively new to Plant Biology who would like to learn more about the variety of tools and resources available on the web. There will be a combination of resource overview talks and application talks which illustrate the use of specific online resources with real world examples.
11:30-11:32 GENERAL INTRO 11:32-11:40 Gramene Comparative Genomics & Pathway Analysis - Marcela K. Tello-Ruiz 11:40-11:48 Automated Clustering of Plant Gene Families from NCBI Databases - Ben Busby 11:48-11:56 MaizeGDB Interoperability for Multiple Genomes - Margaret Woodhouse 11:56-12:04 Adding functional annotations to Apollo - Nathan Dunn 12:04-12:12 Expression Atlas: submission and visualisation of plant expression data - Nancy George 12:12-12:20 Rice SNP-Seek, the open source database for thousands of genomes - Ken McNally 12:20-12:28 RNA-seq analysis in KBase - Sunita Kumari 12.28-12.30 BREAK 12:30-12:38 Reproducible Analyses with Jupyter and R on CyVerse - Jason Williams 12:38-12:46 Genome Context Viewer: Enabling Comparative and Pan-Genomic Analysis across Federated Databases - Andrew Farmer 12:46-12:54 GEMmaker: a Nextflow workflow for processing large RNA-seq datasets - John Hadish 12:54-13:02 KitBase: A genomic resource to advance rice research - Rashmi Jain 13:02-13:10 SciApps: an automated workflow platform built on long term storage and computing resources - Liya Wang 13:10-13:18 BAR updates: ePlants, AGENT, Thalemine and more - Asher Pasha 13:16-13:26 TAIR Bioinformatics Resources - Sabarinath Subramaniam 13:26-13:30 QUESTIONS
